Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6279

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14646 and 14647 are separated by 200 nucleotides14647 and 14648 are separated by 398 nucleotides mRNA_6278: 14646 - K17080 PHB1 prohibitin 1, at 426,858 to 428,286 14646 mRNA_6279: 14647 - K13110 MFAP1 microfibrillar-associated protein 1, at 428,487 to 430,631 14647 mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431,030 to 432,502 14648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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427,802 - 14646 mRNA_6278 0.66 +2.0
427,802 + 14646 mRNA_6278 0.66 +1.4
429,267 - 14647 mRNA_6279 0.36 -0.7
430,671 + -0.2
430,843 - -0.2

Or see this region's nucleotide sequence