Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6306

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14674 and 14675 are separated by 284 nucleotides mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811 14675

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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486,564 - -1.9
486,641 + -2.5
486,657 - +2.0
486,779 - +3.0
486,782 - +1.5
486,812 + +1.4
486,957 + +0.5
486,962 - +1.2
486,963 + -0.3
486,980 - +1.4
486,981 + +0.5
487,111 + +1.0
487,247 - +0.7
487,372 + +0.3
487,561 - -0.4
488,091 + -0.8
488,117 - +1.1
488,124 + +1.4
488,286 - 14674 mRNA_6306 0.11 -0.7
489,269 - 14674 mRNA_6306 0.26 -1.2
489,281 - 14674 mRNA_6306 0.26 +0.1
489,605 - 14674 mRNA_6306 0.31 -1.5
489,721 + 14674 mRNA_6306 0.33 +1.6
489,731 + 14674 mRNA_6306 0.33 +0.2
490,438 - 14674 mRNA_6306 0.43 -0.1
490,459 + 14674 mRNA_6306 0.44 +0.6
490,903 - 14674 mRNA_6306 0.50 -1.0
491,341 + 14674 mRNA_6306 0.57 -0.8
491,727 + 14674 mRNA_6306 0.63 -1.7
491,730 - 14674 mRNA_6306 0.63 -0.1
491,788 + 14674 mRNA_6306 0.64 +1.4
492,952 - 14674 mRNA_6306 0.81 -0.3
493,022 + 14674 mRNA_6306 0.82 -0.1
493,236 + 14674 mRNA_6306 0.85 +0.8
493,554 - +0.7
494,285 - +2.1
494,308 - +1.5
494,415 + -0.2
494,446 - +1.1
494,463 + +0.1
494,591 + +1.5
494,604 - -0.5
494,604 - -0.5
494,613 + +0.9
494,615 - +1.6
494,643 + +2.6
494,755 - -1.5
494,779 - -1.0
494,881 - -1.6
494,893 - +0.6
494,894 + +1.9
494,900 - +0.9
494,909 + -1.3
494,912 - +0.3
494,917 + +1.4
494,930 + +0.2
494,943 - 14675 mRNA_6307 0.10 -0.9
495,071 - 14675 mRNA_6307 0.13 +0.8
495,208 - 14675 mRNA_6307 0.16 -0.7

Or see this region's nucleotide sequence