Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6308

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14675 and 14676 are separated by 939 nucleotides14676 and 14677 are separated by 425 nucleotides mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499,751 to 502,382 14676 mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552 14677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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498,878 + +1.5
498,889 - +0.5
498,894 + +1.1
499,024 - +0.8
499,026 - -3.2
499,027 + -1.4
499,031 - +2.9
499,039 + -0.9
499,048 - +0.9
499,050 + +0.4
499,059 + -0.5
499,065 - -0.2
499,100 + +0.4
499,127 + -0.2
499,127 + -0.0
499,129 + +0.3
499,129 - -0.2
499,136 - +0.5
499,139 - -0.2
499,140 + -0.4
499,147 + -2.1
499,152 - +1.2
499,153 - -0.3
499,170 - -1.7
499,174 - -1.7
499,176 - +0.6
499,178 + +0.1
499,179 - -0.1
499,179 + -0.4
499,182 + +1.1
499,183 + -2.4
499,191 - -0.9
499,205 + -0.9
499,220 + -0.2
499,314 - +1.0
499,321 - +0.0
499,323 - +0.8
499,333 - +1.6
499,335 + -0.1
499,338 + -0.0
499,341 - +1.9
499,341 - -0.4
499,342 - +0.2
499,351 + +1.0
499,372 + +0.2
499,482 - -0.7
499,482 - -2.5
499,485 - +1.1
499,486 + -0.9
499,487 - -0.9
499,569 - -0.4
499,625 - +0.6
499,651 - +1.0
499,775 - -0.6
499,933 - -0.2
500,077 + 14676 mRNA_6308 0.12 -0.2
500,078 - 14676 mRNA_6308 0.12 -1.4
500,085 + 14676 mRNA_6308 0.13 +0.5
500,092 + 14676 mRNA_6308 0.13 -0.8
501,512 - 14676 mRNA_6308 0.67 +0.3
502,400 + +0.1
502,428 + +0.6
502,507 - -0.5
502,515 + -2.3
502,523 - +0.5
502,526 - -0.7
502,527 - +1.3
502,538 + -0.9
502,540 + -2.3
502,669 + -0.9
502,682 + -0.4
502,690 - -0.6
502,712 + -0.5
502,983 + 14677 mRNA_6309 0.23 +0.8
502,987 - 14677 mRNA_6309 0.24 +0.8
503,007 + 14677 mRNA_6309 0.27 -1.2
503,220 - 14677 mRNA_6309 0.55 -1.5
503,281 - 14677 mRNA_6309 0.63 +0.4

Or see this region's nucleotide sequence