Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6342

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14709 and 14710 are separated by 257 nucleotides14710 and 14711 are separated by 390 nucleotides mRNA_6341: 14709 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 587,053 to 588,639 14709 mRNA_6342: 14710 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 588,897 to 590,459 14710 mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590,850 to 591,445 14711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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588,725 - +0.6
589,037 - +0.4
589,148 - 14710 mRNA_6342 0.16 -0.1
589,148 + 14710 mRNA_6342 0.16 +1.1
589,461 + 14710 mRNA_6342 0.36 -1.2
589,579 + 14710 mRNA_6342 0.44 -2.0
589,643 - 14710 mRNA_6342 0.48 -0.3
589,735 + 14710 mRNA_6342 0.54 +1.1
589,746 - 14710 mRNA_6342 0.54 +0.1
589,747 + 14710 mRNA_6342 0.54 +0.6
589,778 - 14710 mRNA_6342 0.56 -0.4
589,961 - 14710 mRNA_6342 0.68 -2.2
590,019 + 14710 mRNA_6342 0.72 -0.3
590,311 + +0.5
590,315 + +0.2
590,331 - -0.7
590,612 + -0.6
590,750 - -0.5
590,906 - +1.1

Or see this region's nucleotide sequence