Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6448

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14815 and 14816 are separated by 327 nucleotides14816 and 14817 are separated by 428 nucleotides mRNA_6447: 14815 - Hypothetical Protein, at 816,253 to 817,256 14815 mRNA_6448: 14816 - HMMPfam-F-box-like-PF12937, at 817,584 to 818,438 14816 mRNA_6449: 14817 - HMMPfam-Protein of unknown function (DUF1399)-PF07173, at 818,867 to 821,319 14817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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816,639 + 14815 mRNA_6447 0.38 -0.1
816,944 + 14815 mRNA_6447 0.69 -0.0
817,012 + 14815 mRNA_6447 0.76 -0.2
817,058 + 14815 mRNA_6447 0.80 +1.2
817,060 - 14815 mRNA_6447 0.80 +0.9
817,249 - +0.2
817,272 - -0.2
817,393 - +0.5
817,394 - -0.3
817,608 + +0.3
817,744 - 14816 mRNA_6448 0.19 +0.5
818,305 + 14816 mRNA_6448 0.84 -2.0
818,492 - -0.2
818,538 - +1.6
818,651 + +0.4
818,790 - -0.3
818,859 - -0.0
818,917 - -0.8
819,025 + -0.6
819,050 + -0.2
819,184 - 14817 mRNA_6449 0.13 +1.6
819,262 - 14817 mRNA_6449 0.16 +0.0
819,262 + 14817 mRNA_6449 0.16 -0.8
819,317 - 14817 mRNA_6449 0.18 +0.9
819,352 - 14817 mRNA_6449 0.20 +1.0

Or see this region's nucleotide sequence