Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6450

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14817 and 14818 are separated by 649 nucleotides14818 and 14819 are separated by 852 nucleotides mRNA_6449: 14817 - HMMPfam-Protein of unknown function (DUF1399)-PF07173, at 818,867 to 821,319 14817 mRNA_6450: 14818 - Hypothetical Protein, at 821,969 to 822,682 14818 mRNA_6451: 14819 - Hypothetical Protein, at 823,535 to 824,941 14819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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821,069 - 14817 mRNA_6449 0.90 +0.7
821,090 - +0.9
821,099 + -0.7
821,835 + +1.5
821,884 - +0.6
821,928 - +0.8
821,984 + -0.4
822,261 + 14818 mRNA_6450 0.41 +2.5
822,378 + 14818 mRNA_6450 0.57 +1.7
822,380 + 14818 mRNA_6450 0.58 -0.1
822,392 - 14818 mRNA_6450 0.59 +3.5
822,392 - 14818 mRNA_6450 0.59 +0.6
822,433 + 14818 mRNA_6450 0.65 -0.3
822,557 - 14818 mRNA_6450 0.82 +0.1
822,567 + 14818 mRNA_6450 0.84 -2.8
822,570 - 14818 mRNA_6450 0.84 -1.5
822,583 + 14818 mRNA_6450 0.86 -0.9
822,601 + 14818 mRNA_6450 0.89 -0.9
822,680 - +0.4
822,689 + -0.8
822,713 - +0.2
822,718 + -0.9
822,830 - -0.7
822,975 - -0.4
823,000 - -0.5
823,292 - -0.6
823,473 + +1.0
823,589 + -0.9

Or see this region's nucleotide sequence