Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6453

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14820 and 14821 are separated by 546 nucleotides14821 and 14822 are separated by 692 nucleotides mRNA_6452: 14820 - Hypothetical Protein, at 825,555 to 826,689 14820 mRNA_6453: 14821 - K03801 lipB lipoyl(octanoyl) transferase, at 827,236 to 828,223 14821 mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828,916 to 829,758 14822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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826,243 + 14820 mRNA_6452 0.61 -0.4
826,499 - 14820 mRNA_6452 0.83 -1.7
826,507 - 14820 mRNA_6452 0.84 -1.1
826,678 - -1.8
827,009 - +0.3
827,017 + +0.2
827,276 + -2.3
827,291 - +0.4
828,319 - -0.6
828,338 + -2.1
828,397 - +0.8
828,447 - +0.6
828,449 - -1.7
828,464 + -0.8
828,473 + +0.8
828,474 - +1.1
828,492 + -1.5
828,618 - +1.7
828,627 + -0.8
828,630 - +0.9
828,632 + -0.6
828,654 + -0.2
828,702 + -2.1
828,703 + +0.4
828,769 - -0.6
828,772 - -1.7
828,776 + -0.2
828,778 + +0.6
828,834 - +1.1
828,839 + +1.4
828,841 - -1.2
828,849 + +0.2
828,857 + -1.0
828,861 + -0.8
828,864 + +0.2
828,994 + -0.9
828,994 + -0.8
828,995 - -0.9

Or see this region's nucleotide sequence