Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6500

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14868 and 14869 are separated by 238 nucleotides mRNA_6500: 14868 - K14416 HBS1 elongation factor 1 alpha-like protein, at 933,622 to 935,186 14868 mRNA_6501: 14869 - K06902 UMF1 MFS transporter, UMF1 family, at 935,425 to 937,523 14869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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933,794 - 14868 mRNA_6500 0.11 -0.3
933,950 - 14868 mRNA_6500 0.21 +1.0
935,300 + +0.3
935,855 - 14869 mRNA_6501 0.20 -0.8
935,988 - 14869 mRNA_6501 0.27 -0.5
936,123 - 14869 mRNA_6501 0.33 -0.9

Or see this region's nucleotide sequence