Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6522

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14889 and 14890 are separated by 252 nucleotides mRNA_6521: 14889 - K14788 NOL10, ENP2 ribosome biogenesis protein ENP2, at 989,346 to 992,026 14889 mRNA_6522: 14890 - K19871 SALL sal-like protein, at 992,279 to 994,205 14890

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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991,729 + 14889 mRNA_6521 0.89 -1.3
992,009 - +0.5
992,021 - +1.1
992,115 + +0.5
992,132 + +0.7
992,133 + -0.3
992,159 + +0.1
992,205 + -0.1
992,246 - +0.5
992,319 + -0.6
992,477 + 14890 mRNA_6522 0.10 -1.2
992,770 - 14890 mRNA_6522 0.25 +0.3
992,771 + 14890 mRNA_6522 0.26 +0.9
992,780 - 14890 mRNA_6522 0.26 -0.1
992,851 + 14890 mRNA_6522 0.30 -1.3
992,939 - 14890 mRNA_6522 0.34 +0.8
993,903 - 14890 mRNA_6522 0.84 -2.7
993,948 - 14890 mRNA_6522 0.87 -1.2
993,994 + 14890 mRNA_6522 0.89 +0.6
994,112 + +0.9
994,136 - -0.0
994,198 + +0.7
994,232 + -1.1
994,261 - +0.1
994,262 + +0.1
994,276 - +1.0
994,286 - -2.5
994,286 - -2.8
994,295 - -0.7
994,297 + +0.4
994,298 + -0.1
994,302 + +1.4
994,305 + -1.5
994,337 - +0.8
994,446 + +1.1
994,467 - -0.8
994,468 - -1.3
994,468 + -0.2
994,469 - +0.8
994,480 + +0.2
994,496 + +2.3
994,499 - -1.2
994,508 + -1.4
994,617 + -0.1
994,618 - +2.0
994,626 - -0.7
994,629 - -1.1
994,631 - +0.7
994,644 - -1.5
994,651 + +0.6
994,657 + +0.7
994,665 + +1.1
994,728 - -0.6
994,733 + +0.5
994,738 - +0.3
994,874 - -0.5
994,892 + -0.4
994,934 + -0.1
994,952 + -0.4
994,955 - -0.9
994,959 - -1.6
994,969 + +0.1
994,975 + -0.6
994,976 - +0.6
994,976 + -1.9
994,976 + -0.5
995,147 + +0.1
995,160 - +3.7

Or see this region's nucleotide sequence