Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6625

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14992 and 14993 are separated by 118 nucleotides14993 and 14994 are separated by 377 nucleotides mRNA_6624: 14992 - Hypothetical Protein, at 1,274,001 to 1,275,291 14992 mRNA_6625: 14993 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1,275,410 to 1,278,515 14993 mRNA_6626: 14994 - Hypothetical Protein, at 1,278,893 to 1,279,645 14994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,274,610 - 14992 mRNA_6624 0.47 +0.7
1,274,629 + 14992 mRNA_6624 0.49 +0.5
1,274,636 - 14992 mRNA_6624 0.49 +0.9
1,274,638 + 14992 mRNA_6624 0.49 -0.1
1,274,708 - 14992 mRNA_6624 0.55 -1.8
1,274,777 - 14992 mRNA_6624 0.60 -0.5
1,274,846 + 14992 mRNA_6624 0.65 -1.3
1,275,033 - 14992 mRNA_6624 0.80 -0.7
1,275,092 + 14992 mRNA_6624 0.85 +0.6
1,275,175 - -0.8
1,275,215 + -0.4
1,275,223 + +0.6
1,275,312 + -1.2
1,275,326 - -0.5
1,275,340 + +0.7
1,275,345 + -2.4
1,275,515 + -1.1
1,275,536 - +0.5
1,275,658 + +0.9
1,276,072 + 14993 mRNA_6625 0.21 +3.0
1,276,198 + 14993 mRNA_6625 0.25 +1.5
1,276,205 + 14993 mRNA_6625 0.26 -2.3
1,276,357 + 14993 mRNA_6625 0.30 +1.5
1,276,476 + 14993 mRNA_6625 0.34 -0.0
1,276,482 - 14993 mRNA_6625 0.35 +3.0
1,276,489 + 14993 mRNA_6625 0.35 +0.6
1,276,489 + 14993 mRNA_6625 0.35 +0.1
1,276,525 + 14993 mRNA_6625 0.36 -0.7
1,276,600 - 14993 mRNA_6625 0.38 +1.7
1,276,611 - 14993 mRNA_6625 0.39 +0.1
1,276,660 - 14993 mRNA_6625 0.40 +0.2
1,276,697 + 14993 mRNA_6625 0.41 -1.3
1,276,963 - 14993 mRNA_6625 0.50 +2.0
1,277,035 - 14993 mRNA_6625 0.52 -0.7
1,277,364 - 14993 mRNA_6625 0.63 -0.4
1,277,684 - 14993 mRNA_6625 0.73 -0.2
1,277,881 + 14993 mRNA_6625 0.80 -0.2
1,277,881 + 14993 mRNA_6625 0.80 +0.5
1,278,421 - -0.1
1,278,422 + +1.5
1,278,427 - +0.4
1,278,524 + -2.1
1,278,524 + -1.0
1,278,524 + -0.6
1,278,527 - -0.9
1,278,537 + +2.1
1,278,551 + +2.4
1,278,554 + -0.0
1,278,556 - +0.8
1,278,560 - +0.8
1,278,561 + -0.0
1,278,565 + +0.1
1,278,573 - -0.0
1,278,576 - +1.6
1,278,775 + -1.3
1,278,923 - -0.8
1,278,937 + +1.1
1,279,253 - 14994 mRNA_6626 0.48 -0.4
1,279,254 + 14994 mRNA_6626 0.48 -1.7
1,279,324 + 14994 mRNA_6626 0.57 +3.5
1,279,374 - 14994 mRNA_6626 0.64 -0.7
1,279,451 + 14994 mRNA_6626 0.74 +0.0

Or see this region's nucleotide sequence