Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6649

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15016 and 15017 are separated by 364 nucleotides15017 and 15018 are separated by 612 nucleotides mRNA_6648: 15016 - BLAST Gluconolactonase [Termitomyces sp. J132], at 1,342,998 to 1,344,316 15016 mRNA_6649: 15017 - K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3, at 1,344,681 to 1,347,468 15017 mRNA_6650: 15018 - HMMPfam-Domain of unknown function (DUF1772)-PF08592, at 1,348,081 to 1,348,867 15018

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,344,131 - 15016 mRNA_6648 0.86 -1.4
1,344,434 - +2.3
1,344,440 - +0.9
1,344,442 - -0.4
1,344,573 - +1.1
1,344,574 + +0.4
1,344,576 - -1.7
1,345,170 - 15017 mRNA_6649 0.18 +0.1
1,347,278 + +1.1
1,347,503 - +0.0
1,347,798 - +0.1
1,347,836 - -2.4
1,347,986 - -2.6
1,347,989 - +0.9
1,348,090 - +1.0
1,348,131 + -0.4

Or see this region's nucleotide sequence