Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6732

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15099 and 15100 are separated by 503 nucleotides mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601 15099 mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903 15100

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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18,184 + 15099 mRNA_6731 0.86 +1.6
18,552 - +0.1
18,970 - +1.0
19,961 - -2.2
19,984 + +0.1
19,992 + +0.0
20,004 - -0.9
20,137 - -1.2
20,171 + +0.3
20,288 + +0.8
20,457 - +0.4
20,539 + -1.8
20,571 + +0.8
20,585 - -0.4
20,586 + -0.0
20,597 - +0.9
20,604 + +0.5
20,604 + -0.7
20,632 + -1.9
20,723 - +0.6
20,735 - +0.1
20,766 + +0.5
20,777 - +0.9
20,786 + -2.9

Or see this region's nucleotide sequence