Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6747

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15114 and 15115 are separated by 146 nucleotides15115 and 15116 are separated by 487 nucleotides mRNA_6746: 15114 - KOG3381 Uncharacterized conserved protein, at 49,790 to 50,693 15114 mRNA_6747: 15115 - Hypothetical Protein, at 50,840 to 52,306 15115 mRNA_6748: 15116 - Hypothetical Protein, at 52,794 to 54,250 15116

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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50,749 + -0.2
50,764 + -0.1
50,805 + +0.7
50,805 - +1.6
50,858 - +1.0
50,893 - -0.2
50,934 + +1.2
51,163 + 15115 mRNA_6747 0.22 -0.3
51,181 + 15115 mRNA_6747 0.23 -1.5
51,181 + 15115 mRNA_6747 0.23 +1.4
51,283 - 15115 mRNA_6747 0.30 -1.7
51,283 + 15115 mRNA_6747 0.30 -0.1
51,353 + 15115 mRNA_6747 0.35 +1.7
51,620 + 15115 mRNA_6747 0.53 +2.2
52,031 + 15115 mRNA_6747 0.81 -0.3
52,236 + +2.3
52,262 - -1.1
52,360 + -0.7
52,381 + +0.2
52,493 - +0.5
52,496 + +0.4
52,517 + -0.9
52,660 + -0.4
52,665 + +1.3
52,667 - +1.4
52,776 - +0.9
52,806 + +0.8
52,889 - -0.1
52,936 - +1.5
53,065 - 15116 mRNA_6748 0.19 +0.8
53,090 + 15116 mRNA_6748 0.20 +0.5

Or see this region's nucleotide sequence