Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6824

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15190 and 15191 are separated by 40 nucleotides15191 and 15192 are separated by 302 nucleotides15192 and 15193 are separated by 212 nucleotides mRNA_6822: 15190 - K20303 TRAPPC4, TRS23 trafficking protein particle complex subunit 4, at 212,371 to 212,952 15190 mRNA_6823: 15191 - BLAST TNFR/NGFR cysteine-rich region family protein [Rh..., at 212,993 to 213,573 15191 mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213,876 to 215,865 15192 mRNA_6825: 15193 - K08876 SCYL1 SCY1-like protein 1, at 216,078 to 219,615 15193

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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213,241 + 15191 mRNA_6823 0.43 -2.2
215,985 + -0.1
215,994 + -0.8
215,998 + +0.6
216,095 + +0.7
216,096 - +0.4
216,128 + -0.1
216,415 + +0.6
216,693 + 15193 mRNA_6825 0.17 +1.9
216,713 - 15193 mRNA_6825 0.18 -0.9
216,733 + 15193 mRNA_6825 0.19 -0.8

Or see this region's nucleotide sequence