Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6842

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15209 and 15210 are separated by 45 nucleotides15210 and 15211 are separated by 122 nucleotides mRNA_6841: 15209 - K14328 UPF3, RENT3 regulator of nonsense transcripts 3, at 247,342 to 248,930 15209 mRNA_6842: 15210 - K02605 ORC3 origin recognition complex subunit 3, at 248,976 to 251,916 15210 mRNA_6843: 15211 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 252,039 to 252,813 15211

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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248,623 - 15209 mRNA_6841 0.81 +1.4
248,628 + 15209 mRNA_6841 0.81 -1.1
249,540 + 15210 mRNA_6842 0.19 -0.4
251,863 + +0.2
252,000 - +1.9
252,000 - -1.5
252,147 + 15211 mRNA_6843 0.14 +0.3
252,160 - 15211 mRNA_6843 0.16 -1.3
252,165 + 15211 mRNA_6843 0.16 -1.6
252,315 + 15211 mRNA_6843 0.36 -1.3
252,324 - 15211 mRNA_6843 0.37 -0.7
252,330 - 15211 mRNA_6843 0.38 -0.4
252,416 - 15211 mRNA_6843 0.49 -1.3
252,599 - 15211 mRNA_6843 0.72 -0.2
252,610 - 15211 mRNA_6843 0.74 -1.9

Or see this region's nucleotide sequence