Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6878

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15245 and 15246 are separated by 378 nucleotides mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333,940 to 335,664 15245 mRNA_6878: 15246 - Hypothetical Protein, at 336,043 to 337,941 15246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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335,206 - 15245 mRNA_6877 0.73 +0.2
335,376 + 15245 mRNA_6877 0.83 +0.1
335,549 + +0.7
335,663 + +0.1
336,347 - 15246 mRNA_6878 0.16 +0.4
336,355 - 15246 mRNA_6878 0.16 -1.2
336,367 - 15246 mRNA_6878 0.17 -0.9
336,511 + 15246 mRNA_6878 0.25 -0.2
336,532 + 15246 mRNA_6878 0.26 +2.0
337,139 - 15246 mRNA_6878 0.58 +0.2
338,016 + +0.0
338,145 + -0.5
338,301 - +0.5
338,310 + -0.5
338,316 - +0.6
338,375 - +3.6
338,453 - +0.3
338,617 - -0.1
338,641 - +0.0
338,654 - +1.7

Or see this region's nucleotide sequence