Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6894

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15262 and 15263 are separated by 247 nucleotides mRNA_6894: 15262 - K14326 UPF1, RENT1 regulator of nonsense transcripts 1, at 375,267 to 378,241 15262 mRNA_6895: 15263 - K18183 COX19 cytochrome c oxidase assembly protein subunit 19, at 378,489 to 378,951 15263

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,391 + +1.8
374,973 - +0.1
378,311 - -0.1
378,331 + -1.4
378,331 - +1.4

Or see this region's nucleotide sequence