Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6918

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15286 and 15287 are separated by 252 nucleotides mRNA_6918: 15286 - HMMPfam-Coiled-coil domain-containing protein 56-PF09813, at 430,003 to 430,506 15286 mRNA_6919: 15287 - K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2, at 430,759 to 431,959 15287

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,204 - -0.7
429,239 + +0.4
429,314 - +2.0
429,332 + +2.7
429,369 - +1.5
429,394 + -1.4
429,425 + +0.9
429,500 - +0.3
429,509 + +0.3
429,512 - -0.1
429,516 - -2.2
429,522 - -0.8
429,522 - -0.7
429,527 + +0.8
429,550 + +1.1
429,557 + +0.7
429,564 + -0.7
429,596 + +0.2
429,597 - +2.5
429,600 + +0.4
429,609 + +1.6
429,612 - +0.5
429,621 - -0.3
429,626 - +0.6
429,634 + +1.7
429,651 - -0.7
429,661 - -1.6
429,784 + +0.3
429,786 - -0.6
429,799 - +1.2
430,705 - -1.6
430,722 - +0.6

Or see this region's nucleotide sequence