Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6938

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15305 and 15306 are separated by 113 nucleotides15306 and 15307 are separated by 175 nucleotides mRNA_6937: 15305 - K03781 katE, CAT, catB, srpA catalase, at 476,107 to 478,851 15305 mRNA_6938: 15306 - SUPERFAMILY--SSF56801, at 478,965 to 480,801 15306 mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480,977 to 484,798 15307

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,050 - 15305 mRNA_6937 0.71 +2.1
478,137 + 15305 mRNA_6937 0.74 +0.3
478,172 + 15305 mRNA_6937 0.75 +0.8
478,337 + 15305 mRNA_6937 0.81 +0.1
478,482 + 15305 mRNA_6937 0.87 -1.1
478,580 - -0.2
478,930 - +0.3
479,067 - +1.1
480,128 + 15306 mRNA_6938 0.63 -0.0
480,587 + 15306 mRNA_6938 0.88 -0.6
480,694 - -1.5
480,728 + +2.1
480,868 + +0.5
480,872 + -0.2
480,875 + +1.4
480,880 + -0.6
481,155 + -0.7
481,156 - -0.2
481,177 - -1.1
481,219 - +2.0
481,326 + +0.6

Or see this region's nucleotide sequence