Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6957

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15324 and 15325 are separated by 113 nucleotides mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528,007 to 529,680 15324 mRNA_6957: 15325 - K13100 CWC22 pre-mRNA-splicing factor CWC22, at 529,794 to 532,653 15325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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528,824 + 15324 mRNA_6956 0.49 -2.2
528,851 + 15324 mRNA_6956 0.50 -0.4
528,860 - 15324 mRNA_6956 0.51 +0.2
529,572 + -0.8
529,724 - -0.6
529,727 - -0.4
529,737 + +1.4
529,752 + -0.3
532,678 - -0.5
532,799 + +0.0
532,816 + +1.2
532,879 + -1.1
532,913 - -0.9
532,924 + -0.0
532,926 + +0.3
532,933 + -0.3
532,935 - -0.0
532,936 - +0.5
532,949 + -0.0
532,950 + +2.4
533,036 + -0.3
533,068 + +0.2
533,092 + +0.9
533,098 - -0.0
533,121 + -0.1
533,134 + -0.5
533,159 - +0.3
533,171 + -0.4
533,173 - +0.7
533,174 + +0.8
533,212 + -0.1
533,223 + -1.2
533,224 - -1.2
533,245 - +1.8
533,357 + -0.8
533,376 + +0.9
533,380 + -0.1
533,380 - +0.8
533,383 - -2.2
533,384 + -0.4
533,391 + +1.4
533,395 + +0.5
533,398 - -1.0
533,408 + +0.4
533,408 + +0.1
533,409 + -0.3
533,409 + -0.4
533,409 + -0.6
533,429 - +0.5
533,431 + -0.2
533,432 + +0.4
533,433 - +1.9
533,439 - +0.5
533,446 + +0.1
533,483 + -0.0
533,484 - +1.3
533,485 + -0.6
533,493 - +2.2
533,507 - +3.3
533,514 + +1.0
533,514 - +1.8
533,515 - +0.0
533,522 + +1.2
533,524 - +1.7
533,526 - -1.6

Or see this region's nucleotide sequence