Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6972

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15339 and 15340 are separated by 134 nucleotides15340 and 15341 are separated by 172 nucleotides mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567,242 to 568,041 15339 mRNA_6972: 15340 - K20279 SYNJ synaptojanin, at 568,176 to 572,419 15340 mRNA_6973: 15341 - K11303 HAT1, KAT1 histone acetyltransferase 1, at 572,592 to 574,305 15341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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567,224 - -0.8
567,226 - +0.0
567,236 - +1.8
567,236 - -0.6
567,385 + 15339 mRNA_6971 0.18 +0.6
567,501 - 15339 mRNA_6971 0.32 -1.8
567,949 + 15339 mRNA_6971 0.88 -0.1
567,952 + 15339 mRNA_6971 0.89 +0.1
568,079 - +0.7
568,090 + -0.9
568,104 + +0.2
568,106 - +1.5
568,222 - -0.4
568,232 - +1.8
568,242 + +0.6
568,381 + +1.1
568,533 + -1.6
568,996 + 15340 mRNA_6972 0.19 -1.0
569,274 - 15340 mRNA_6972 0.26 +0.8
569,592 + 15340 mRNA_6972 0.33 -1.4
569,881 - 15340 mRNA_6972 0.40 -3.2
570,001 - 15340 mRNA_6972 0.43 +0.1
570,850 + 15340 mRNA_6972 0.63 -0.0
570,880 - 15340 mRNA_6972 0.64 -1.0
571,171 - 15340 mRNA_6972 0.71 -0.1
571,192 + 15340 mRNA_6972 0.71 -3.2
571,461 + 15340 mRNA_6972 0.77 +0.5
571,502 - 15340 mRNA_6972 0.78 +1.6
571,753 - 15340 mRNA_6972 0.84 +0.5
571,950 - 15340 mRNA_6972 0.89 +1.3
572,365 - -0.9
572,516 - -1.6
572,645 - -1.2
572,672 + -0.4
572,678 + -1.1
572,791 + 15341 mRNA_6973 0.12 -0.5

Or see this region's nucleotide sequence