Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7040

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15408 and 15409 are separated by 436 nucleotides mRNA_7040: 15408 - Hypothetical Protein, at 733,097 to 733,346 15408 mRNA_7041: 15409 - KOG1577 Aldo/keto reductase family proteins, at 733,783 to 735,045 15409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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732,136 - -1.0
732,140 - -0.6
732,262 + -0.1
732,570 + +0.5
732,697 - -0.3
732,703 + -1.6
732,714 - +0.3
732,716 - +1.0
732,723 - -0.1
732,725 + +0.8
732,808 + +0.4
732,993 - -0.7
733,013 - +0.6
733,125 - 15408 mRNA_7040 0.11 -2.1
733,137 - 15408 mRNA_7040 0.16 +0.6
733,145 + 15408 mRNA_7040 0.19 +0.5
733,154 - 15408 mRNA_7040 0.23 -1.0
733,279 + 15408 mRNA_7040 0.73 -0.1
733,281 - 15408 mRNA_7040 0.74 -2.1
733,289 + 15408 mRNA_7040 0.77 -0.1
733,309 + 15408 mRNA_7040 0.85 -0.7
733,316 - 15408 mRNA_7040 0.88 +0.1
733,318 + 15408 mRNA_7040 0.88 -0.7
733,321 + 15408 mRNA_7040 0.90 -0.9
733,325 + +0.2
733,325 - +1.5
733,326 - -0.4
733,327 - -0.1
733,328 + -0.5
733,332 + +1.0
733,340 + +1.2
733,344 - -0.3
733,351 - -0.6
733,356 + +0.3
733,356 + -0.9
733,367 - +1.4
733,393 - -0.1
733,470 - -0.6
733,476 + -1.6
733,477 + +0.8
733,488 + +1.7
733,488 + +2.1
733,490 + +0.1
733,490 + +0.1
733,491 - +0.8
733,493 - -0.8
733,493 - +0.7
733,494 + -0.6
733,496 + -1.7
733,505 - +1.2
733,547 - -2.4
733,548 - -0.1
733,552 - -0.3
733,566 - -0.1
733,567 - -0.0
733,567 + +0.5
733,568 - -0.5
733,568 - +3.0
733,570 - +0.6
733,571 + +0.8
733,722 - -0.3
733,733 + -1.0
733,751 + -0.5
733,885 + -1.2
734,184 - 15409 mRNA_7041 0.32 -1.4
734,188 + 15409 mRNA_7041 0.32 +0.1

Or see this region's nucleotide sequence