Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7043

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15410 and 15411 are separated by 271 nucleotides15411 and 15412 are separated by 194 nucleotides mRNA_7042: 15410 - Hypothetical Protein, at 735,452 to 736,654 15410 mRNA_7043: 15411 - Hypothetical Protein, at 736,926 to 740,766 15411 mRNA_7044: 15412 - KOG4299 PHD Zn-finger protein, at 740,961 to 743,698 15412

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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736,084 + 15410 mRNA_7042 0.53 -0.5
736,229 - 15410 mRNA_7042 0.65 -1.8
736,541 + -1.7
736,665 + +0.1
736,788 + -1.5
736,794 - -1.4
736,803 + +0.2
736,806 - +0.6
736,808 - -0.8
736,811 + -0.1
736,812 - +2.0
736,825 - +1.0
736,834 - -1.0
736,834 - -0.5
736,843 + +0.1
736,855 + +0.2
736,855 - -0.4
736,856 - -0.4
736,858 + +0.3
736,898 - -0.4
736,913 + +0.8
736,917 + -0.9
736,930 + -0.6
736,935 - -0.3
736,960 + +0.0
736,964 - +2.2
736,972 + +2.6
736,977 - -0.4
736,980 + +0.5
736,986 + -0.4
736,993 - +0.1
737,001 - +0.5
737,002 + +1.1
737,026 - +0.3
737,031 + -0.5
737,032 - +1.7
737,056 + -2.1
737,069 - +0.0
737,081 + +2.8
737,084 - -0.2
737,098 + +0.4
737,098 - +0.8
737,109 - -0.7
737,119 - -0.9
737,119 + +0.5
737,122 - +2.0
737,128 - +1.3
737,143 - +0.7
737,146 - +1.5
737,156 - +0.3
737,157 - +0.2
737,157 + +1.1
737,161 - -0.0
737,163 - +0.5
737,163 + -1.3
737,166 + +0.8
737,168 + -0.2
737,169 - +0.2
737,171 - -0.7
737,175 + -0.6
737,179 + +0.3
737,183 + -0.1
737,198 + +0.0
737,320 - 15411 mRNA_7043 0.10 -1.3
737,327 + 15411 mRNA_7043 0.10 -0.4
737,346 - 15411 mRNA_7043 0.11 -2.8
737,642 + 15411 mRNA_7043 0.19 +0.5
738,037 - 15411 mRNA_7043 0.29 +1.5
738,037 - 15411 mRNA_7043 0.29 -1.1
738,069 - 15411 mRNA_7043 0.30 -1.5
738,120 - 15411 mRNA_7043 0.31 +0.1
738,176 + 15411 mRNA_7043 0.33 +0.0
738,307 + 15411 mRNA_7043 0.36 +0.6
738,624 + 15411 mRNA_7043 0.44 -0.8
738,640 - 15411 mRNA_7043 0.45 -0.0
738,933 - 15411 mRNA_7043 0.52 +0.1
739,037 - 15411 mRNA_7043 0.55 -0.1
739,507 + 15411 mRNA_7043 0.67 -0.0
739,703 - 15411 mRNA_7043 0.72 -0.6
740,660 + +0.0
740,866 + +0.2
741,139 - -0.4

Or see this region's nucleotide sequence