Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7101

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15468 and 15469 are separated by 97 nucleotides15469 and 15470 are separated by 454 nucleotides mRNA_7100: 15468 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 880,881 to 881,621 15468 mRNA_7101: 15469 - K08968 E1.8.4.14 L-methionine (R)-S-oxide reductase, at 881,719 to 882,426 15469 mRNA_7102: 15470 - K03441 GLP-F aquaglyceroporin related protein, other eukaryote, at 882,881 to 885,755 15470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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880,836 - -0.6
880,847 + -0.6
880,996 + 15468 mRNA_7100 0.16 -0.0
881,007 - 15468 mRNA_7100 0.17 +0.8
881,149 - 15468 mRNA_7100 0.36 +0.2
881,365 + 15468 mRNA_7100 0.65 -0.5
881,383 + 15468 mRNA_7100 0.68 -0.2
881,594 - +0.3
881,597 + -0.3
881,731 + -1.5
881,870 - 15469 mRNA_7101 0.21 -0.3
881,876 - 15469 mRNA_7101 0.22 -0.6
881,882 - 15469 mRNA_7101 0.23 -1.0
881,896 + 15469 mRNA_7101 0.25 -1.3
882,017 + 15469 mRNA_7101 0.42 -1.8
882,027 - 15469 mRNA_7101 0.44 -1.5
882,053 - 15469 mRNA_7101 0.47 -1.0
882,114 - 15469 mRNA_7101 0.56 +0.8
882,177 - 15469 mRNA_7101 0.65 +1.5
882,187 - 15469 mRNA_7101 0.66 +1.6
882,189 + 15469 mRNA_7101 0.66 -0.3
882,191 + 15469 mRNA_7101 0.67 -0.5
882,192 - 15469 mRNA_7101 0.67 -0.2
882,192 - 15469 mRNA_7101 0.67 -0.2
882,209 + 15469 mRNA_7101 0.69 +2.1
882,213 - 15469 mRNA_7101 0.70 +0.0
882,219 + 15469 mRNA_7101 0.71 +0.7
882,236 + 15469 mRNA_7101 0.73 -1.0
882,380 - -1.6
882,464 - -1.0
882,465 + -0.5
882,472 - -0.1
882,475 - +0.4
882,477 - -1.7
882,485 - -1.0
882,486 - -0.5
882,585 + +0.2
882,648 - +1.3
882,655 - +0.3
882,787 - -1.7
882,790 - +0.6
883,060 - -0.3

Or see this region's nucleotide sequence