Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7202

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15570 and 15571 are separated by 418 nucleotides mRNA_7202: 15570 - BLAST expressed protein [Schizophyllum commune H4-8], at 1,114,598 to 1,116,193 15570 mRNA_7203: 15571 - SUPERFAMILY--SSF52047, at 1,116,612 to 1,117,999 15571

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,113,746 - -1.0
1,113,763 - -0.5
1,113,765 - -0.0
1,113,893 + -0.2
1,113,898 - +0.2
1,113,911 + -0.7
1,114,039 + -0.1
1,114,201 + +1.8
1,114,210 + +2.0
1,114,524 + +0.9
1,114,656 - -1.2
1,114,659 - -1.6
1,114,786 - 15570 mRNA_7202 0.12 -0.8
1,115,080 + 15570 mRNA_7202 0.30 -2.0
1,115,242 + 15570 mRNA_7202 0.40 +0.1
1,115,335 + 15570 mRNA_7202 0.46 +2.2
1,115,548 + 15570 mRNA_7202 0.60 -0.5
1,115,551 + 15570 mRNA_7202 0.60 +1.2
1,115,681 - 15570 mRNA_7202 0.68 +0.7
1,115,880 - 15570 mRNA_7202 0.80 -1.1
1,115,932 + 15570 mRNA_7202 0.84 +2.2
1,115,932 - 15570 mRNA_7202 0.84 +1.2
1,115,953 - 15570 mRNA_7202 0.85 -0.1
1,115,957 - 15570 mRNA_7202 0.85 +0.8
1,115,970 + 15570 mRNA_7202 0.86 +0.2
1,115,974 + 15570 mRNA_7202 0.86 -0.9
1,115,989 - 15570 mRNA_7202 0.87 -2.3
1,116,012 - 15570 mRNA_7202 0.89 +1.4
1,116,017 + 15570 mRNA_7202 0.89 +1.9
1,116,021 - 15570 mRNA_7202 0.89 +0.3
1,116,257 + -0.1
1,116,260 - -1.4
1,116,261 + -1.2
1,116,265 + -0.1
1,116,282 + -3.2
1,116,398 + +1.2
1,116,398 - -1.2
1,116,420 + -0.5
1,116,443 + -0.4
1,116,545 - -0.1
1,116,547 - +0.3
1,116,567 - -0.5
1,116,570 + +0.6
1,116,576 - -1.0
1,116,706 - -1.0
1,116,723 - +1.8
1,116,730 + +1.1
1,116,730 + +0.1
1,116,911 + 15571 mRNA_7203 0.22 -0.3
1,117,006 - 15571 mRNA_7203 0.28 -0.3
1,117,070 + 15571 mRNA_7203 0.33 -0.2
1,117,169 + 15571 mRNA_7203 0.40 -0.1

Or see this region's nucleotide sequence