Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7250

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15617 and 15618 are separated by 343 nucleotides15618 and 15619 are separated by 322 nucleotides mRNA_7249: 15617 - Hypothetical Protein, at 1,217,873 to 1,218,626 15617 mRNA_7250: 15618 - BLAST ClpP/crotonase [Saitoella complicata NRRL Y-17804], at 1,218,970 to 1,220,341 15618 mRNA_7251: 15619 - Hypothetical Protein, at 1,220,664 to 1,222,024 15619

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,218,028 + 15617 mRNA_7249 0.21 -0.4
1,218,473 - 15617 mRNA_7249 0.80 +0.2
1,218,888 - +1.6
1,218,912 + -0.4
1,218,915 - +0.8
1,219,055 + -1.9
1,219,071 - +1.0
1,219,211 + 15618 mRNA_7250 0.18 -0.1
1,219,243 + 15618 mRNA_7250 0.20 -0.8
1,219,247 - 15618 mRNA_7250 0.20 +1.6
1,219,248 + 15618 mRNA_7250 0.20 -0.6
1,219,248 + 15618 mRNA_7250 0.20 -1.4
1,219,336 - 15618 mRNA_7250 0.27 +0.3
1,219,361 - 15618 mRNA_7250 0.28 -0.0
1,219,373 + 15618 mRNA_7250 0.29 +1.5
1,219,451 + 15618 mRNA_7250 0.35 +0.7
1,219,465 + 15618 mRNA_7250 0.36 -0.2
1,219,497 + 15618 mRNA_7250 0.38 +0.6
1,219,549 - 15618 mRNA_7250 0.42 -0.2
1,219,639 - 15618 mRNA_7250 0.49 -0.9
1,219,647 - 15618 mRNA_7250 0.49 +0.5
1,219,737 - 15618 mRNA_7250 0.56 +0.7
1,219,941 + 15618 mRNA_7250 0.71 -0.0
1,220,072 - 15618 mRNA_7250 0.80 +0.4
1,220,149 + 15618 mRNA_7250 0.86 -0.1
1,220,160 - 15618 mRNA_7250 0.87 +0.8
1,220,193 - 15618 mRNA_7250 0.89 -0.1
1,220,193 - 15618 mRNA_7250 0.89 +0.3
1,220,194 + 15618 mRNA_7250 0.89 +0.5
1,220,199 + 15618 mRNA_7250 0.90 -1.6
1,220,199 + 15618 mRNA_7250 0.90 -1.4
1,220,205 + +0.6
1,220,331 + +0.1
1,220,360 + +2.7
1,220,374 + +0.0
1,220,377 - -0.5
1,220,626 - +1.2
1,220,673 - -0.7
1,220,816 + 15619 mRNA_7251 0.11 -1.8
1,220,938 + 15619 mRNA_7251 0.20 -1.0
1,220,950 + 15619 mRNA_7251 0.21 -0.1
1,220,956 - 15619 mRNA_7251 0.21 -1.3
1,220,956 - 15619 mRNA_7251 0.21 -1.0
1,221,264 + 15619 mRNA_7251 0.44 +1.1
1,221,338 - 15619 mRNA_7251 0.50 +2.2

Or see this region's nucleotide sequence