Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7255

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15622 and 15623 are separated by 53 nucleotides15623 and 15624 are separated by 299 nucleotides mRNA_7254: 15622 - Hypothetical Protein, at 1,226,042 to 1,227,561 15622 mRNA_7255: 15623 - Hypothetical Protein, at 1,227,615 to 1,231,158 15623 mRNA_7256: 15624 - BLAST protein kinase-like domain containing protein [Rh..., at 1,231,458 to 1,233,472 15624

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,226,634 - 15622 mRNA_7254 0.39 +1.0
1,226,711 + 15622 mRNA_7254 0.44 -0.0
1,226,737 + 15622 mRNA_7254 0.46 -0.0
1,226,974 + 15622 mRNA_7254 0.61 -0.8
1,227,028 - 15622 mRNA_7254 0.65 -0.7
1,227,122 + 15622 mRNA_7254 0.71 -0.7
1,227,214 + 15622 mRNA_7254 0.77 -3.8
1,227,393 - 15622 mRNA_7254 0.89 +1.7
1,227,524 - -0.3
1,227,541 + -1.2
1,227,561 + -0.4
1,227,566 - +2.0
1,227,698 - -0.7
1,227,699 - +0.4
1,227,701 - -2.7
1,227,709 - -0.2
1,227,709 - -0.4
1,227,710 - -1.0
1,227,715 + +0.3
1,227,715 + +2.6
1,227,718 + -0.6
1,227,814 - -1.0
1,227,844 - +2.1
1,227,854 - +0.7
1,228,043 + 15623 mRNA_7255 0.12 +2.2
1,228,044 - 15623 mRNA_7255 0.12 -1.3
1,228,044 - 15623 mRNA_7255 0.12 +1.2
1,228,048 - 15623 mRNA_7255 0.12 +0.7
1,228,048 + 15623 mRNA_7255 0.12 -1.5
1,228,054 + 15623 mRNA_7255 0.12 +0.0
1,228,167 + 15623 mRNA_7255 0.16 -1.3
1,228,551 - 15623 mRNA_7255 0.26 -1.1
1,228,609 - 15623 mRNA_7255 0.28 +0.6
1,228,722 - 15623 mRNA_7255 0.31 -0.5
1,228,758 + 15623 mRNA_7255 0.32 +0.9
1,228,882 + 15623 mRNA_7255 0.36 +0.1
1,228,981 - 15623 mRNA_7255 0.39 -0.5
1,229,043 + 15623 mRNA_7255 0.40 +0.1
1,229,310 + 15623 mRNA_7255 0.48 +1.2
1,229,738 + 15623 mRNA_7255 0.60 +0.2
1,229,775 + 15623 mRNA_7255 0.61 -1.1
1,229,811 - 15623 mRNA_7255 0.62 -0.2
1,229,895 - 15623 mRNA_7255 0.64 -0.4
1,229,903 - 15623 mRNA_7255 0.65 +0.6
1,229,920 - 15623 mRNA_7255 0.65 +0.3
1,229,945 + 15623 mRNA_7255 0.66 -0.2
1,229,957 + 15623 mRNA_7255 0.66 +0.2
1,229,960 - 15623 mRNA_7255 0.66 -3.1
1,230,024 - 15623 mRNA_7255 0.68 -2.7
1,230,063 - 15623 mRNA_7255 0.69 -1.1
1,230,185 + 15623 mRNA_7255 0.73 -1.6
1,230,197 + 15623 mRNA_7255 0.73 -0.3
1,230,207 + 15623 mRNA_7255 0.73 -0.4
1,230,249 + 15623 mRNA_7255 0.74 +0.9
1,230,335 + 15623 mRNA_7255 0.77 +2.4
1,230,353 + 15623 mRNA_7255 0.77 -1.4
1,230,356 - 15623 mRNA_7255 0.77 -1.0
1,230,715 - 15623 mRNA_7255 0.87 -1.9
1,230,772 - 15623 mRNA_7255 0.89 -0.2
1,230,777 + 15623 mRNA_7255 0.89 +4.1
1,230,809 + -1.7
1,230,812 - +0.4
1,230,813 - -1.3
1,230,923 - +0.6
1,230,952 + -0.9
1,231,086 + -1.8
1,231,192 - +0.0
1,231,301 - +0.2
1,231,322 + +0.6
1,231,352 - -0.5
1,231,370 - +1.0
1,231,371 + -0.3
1,231,374 + +0.5
1,231,643 - +1.7
1,231,730 - 15624 mRNA_7256 0.13 +0.1
1,231,949 + 15624 mRNA_7256 0.24 -0.2
1,231,955 + 15624 mRNA_7256 0.25 -0.2

Or see this region's nucleotide sequence