Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7277

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15644 and 15645 are separated by 272 nucleotides15645 and 15646 are separated by 235 nucleotides mRNA_7276: 15644 - K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,278,512 to 1,279,383 15644 mRNA_7277: 15645 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,279,656 to 1,282,236 15645 mRNA_7278: 15646 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,282,472 to 1,285,388 15646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,278,750 - 15644 mRNA_7276 0.27 +0.6
1,278,764 + 15644 mRNA_7276 0.29 -0.8
1,278,880 - 15644 mRNA_7276 0.42 -0.7
1,278,881 + 15644 mRNA_7276 0.42 +0.6
1,278,902 + 15644 mRNA_7276 0.45 +1.7
1,279,149 - 15644 mRNA_7276 0.73 +1.6
1,279,159 + 15644 mRNA_7276 0.74 -0.2
1,279,279 - 15644 mRNA_7276 0.88 +0.0
1,279,484 - +1.1
1,279,618 - +0.8
1,280,058 - 15645 mRNA_7277 0.16 -1.4
1,280,393 - 15645 mRNA_7277 0.29 -0.6
1,280,517 - 15645 mRNA_7277 0.33 -0.5
1,280,563 + 15645 mRNA_7277 0.35 -1.4
1,280,959 - 15645 mRNA_7277 0.50 -0.2
1,281,115 - 15645 mRNA_7277 0.57 +0.8
1,281,147 + 15645 mRNA_7277 0.58 +0.6
1,281,212 - 15645 mRNA_7277 0.60 +1.9
1,281,403 - 15645 mRNA_7277 0.68 -0.0
1,281,412 - 15645 mRNA_7277 0.68 -0.1
1,281,504 + 15645 mRNA_7277 0.72 -0.6
1,281,526 + 15645 mRNA_7277 0.72 -2.6
1,281,639 - 15645 mRNA_7277 0.77 +0.8
1,281,640 + 15645 mRNA_7277 0.77 -0.1
1,281,657 + 15645 mRNA_7277 0.78 -0.2
1,281,693 - 15645 mRNA_7277 0.79 +2.9
1,281,819 + 15645 mRNA_7277 0.84 +0.7
1,281,830 + 15645 mRNA_7277 0.84 -0.4
1,281,993 - +0.7
1,282,125 + +0.4
1,282,244 - +1.9
1,282,266 - -0.1
1,282,421 - -0.6
1,282,422 - -0.2
1,282,427 + +1.3
1,282,429 - -0.9
1,282,555 + +0.8
1,282,557 - -0.7
1,282,710 + +2.3
1,282,715 - -0.0
1,282,716 - +0.5
1,282,726 + -1.3
1,282,873 - 15646 mRNA_7278 0.14 +1.0
1,282,890 - 15646 mRNA_7278 0.14 +0.2
1,282,895 + 15646 mRNA_7278 0.15 -1.7
1,283,006 - 15646 mRNA_7278 0.18 +0.5
1,283,014 - 15646 mRNA_7278 0.19 -2.9
1,283,177 - 15646 mRNA_7278 0.24 -1.9

Or see this region's nucleotide sequence