Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7286

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15653 and 15654 are separated by 298 nucleotides15654 and 15655 are separated by 328 nucleotides mRNA_7285: 15653 - HMMPfam-GPR1/FUN34/yaaH family-PF01184,ProSitePatterns-GPR1/FUN34/yaaH family signature.-PS01114, at 1,296,567 to 1,298,156 15653 mRNA_7286: 15654 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 1,298,455 to 1,300,194 15654 mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1,300,523 to 1,304,371 15655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,297,553 - 15653 mRNA_7285 0.62 -0.6
1,297,829 - 15653 mRNA_7285 0.79 +0.5
1,297,837 - 15653 mRNA_7285 0.80 +0.1
1,297,882 - 15653 mRNA_7285 0.83 -1.3
1,298,142 - -0.7
1,298,168 - +0.1
1,298,178 - -0.3
1,298,760 + 15654 mRNA_7286 0.18 +0.1
1,298,891 - 15654 mRNA_7286 0.25 +0.6
1,299,217 - 15654 mRNA_7286 0.44 +0.1
1,299,326 + 15654 mRNA_7286 0.50 +0.8
1,299,656 - 15654 mRNA_7286 0.69 +0.5
1,299,669 - 15654 mRNA_7286 0.70 +1.0
1,299,771 - 15654 mRNA_7286 0.76 -0.5
1,299,943 - 15654 mRNA_7286 0.86 -1.2
1,300,039 - -0.4
1,300,063 + -0.3
1,300,083 - +1.1
1,300,098 - -0.8
1,300,212 + +0.1
1,300,239 - -0.6
1,300,394 + -0.0
1,300,531 - +0.2
1,300,532 - -2.8
1,300,667 - -0.2
1,301,131 + 15655 mRNA_7287 0.16 -1.4
1,301,167 + 15655 mRNA_7287 0.17 -0.1
1,301,177 - 15655 mRNA_7287 0.17 -1.1

Or see this region's nucleotide sequence