Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7300

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15668 and 15669 are separated by 358 nucleotides mRNA_7300: 15668 - SUPERFAMILY--SSF47823, at 1,335,856 to 1,345,801 15668 mRNA_7301: 15669 - Hypothetical Protein, at 1,346,160 to 1,348,267 15669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,334,938 - -0.8
1,335,096 + +0.7
1,335,218 - +0.2
1,335,345 + +2.0
1,335,347 - +1.1
1,335,373 - +0.1
1,335,499 - +2.1
1,335,500 - -1.9
1,335,583 - -1.9
1,335,657 - -0.4
1,335,796 - +0.3
1,335,806 + -1.2
1,335,811 + -0.4
1,335,820 + +0.6
1,336,042 - +0.2
1,336,135 - +1.4
1,336,554 + -1.2
1,336,637 - +0.5
1,336,685 + +0.6
1,336,831 + +1.2
1,336,835 + +1.6
1,336,847 - -0.8
1,337,110 + 15668 mRNA_7300 0.13 -0.2
1,337,161 - 15668 mRNA_7300 0.13 -0.5
1,337,415 - 15668 mRNA_7300 0.16 -0.5
1,337,554 - 15668 mRNA_7300 0.17 -1.1
1,337,630 - 15668 mRNA_7300 0.18 +1.0
1,337,763 + 15668 mRNA_7300 0.19 +0.6
1,337,767 + 15668 mRNA_7300 0.19 -0.1
1,338,556 - 15668 mRNA_7300 0.27 -0.2
1,338,586 - 15668 mRNA_7300 0.27 +0.2
1,338,629 - 15668 mRNA_7300 0.28 +1.8
1,338,745 - 15668 mRNA_7300 0.29 +1.9
1,338,785 - 15668 mRNA_7300 0.29 -0.7
1,338,861 - 15668 mRNA_7300 0.30 +1.5
1,339,043 - 15668 mRNA_7300 0.32 -1.5
1,339,335 + 15668 mRNA_7300 0.35 +0.4
1,339,342 + 15668 mRNA_7300 0.35 -2.0
1,339,348 - 15668 mRNA_7300 0.35 -0.5
1,339,380 + 15668 mRNA_7300 0.35 -1.8
1,339,380 + 15668 mRNA_7300 0.35 -0.0
1,339,419 + 15668 mRNA_7300 0.36 +2.5
1,339,470 + 15668 mRNA_7300 0.36 -0.8
1,339,605 + 15668 mRNA_7300 0.38 +2.5
1,339,658 + 15668 mRNA_7300 0.38 +0.8
1,339,748 - 15668 mRNA_7300 0.39 +0.2
1,339,758 + 15668 mRNA_7300 0.39 -0.3
1,339,836 + 15668 mRNA_7300 0.40 +0.6
1,339,877 - 15668 mRNA_7300 0.40 +0.3
1,340,115 + 15668 mRNA_7300 0.43 -1.3
1,340,230 - 15668 mRNA_7300 0.44 +1.1
1,340,248 + 15668 mRNA_7300 0.44 +0.5
1,340,332 + 15668 mRNA_7300 0.45 -0.7
1,340,346 - 15668 mRNA_7300 0.45 -0.7
1,340,365 - 15668 mRNA_7300 0.45 +0.8
1,340,487 - 15668 mRNA_7300 0.47 +1.8
1,340,626 + 15668 mRNA_7300 0.48 -0.5
1,340,690 - 15668 mRNA_7300 0.49 +0.6
1,340,725 - 15668 mRNA_7300 0.49 +0.7
1,340,746 - 15668 mRNA_7300 0.49 +0.9
1,340,758 + 15668 mRNA_7300 0.49 -0.3
1,340,776 - 15668 mRNA_7300 0.49 -0.0
1,340,802 + 15668 mRNA_7300 0.50 -1.2
1,340,802 + 15668 mRNA_7300 0.50 -2.2
1,340,805 - 15668 mRNA_7300 0.50 -1.3
1,340,928 - 15668 mRNA_7300 0.51 +0.2
1,340,954 - 15668 mRNA_7300 0.51 +0.7
1,340,961 + 15668 mRNA_7300 0.51 -0.1
1,340,975 - 15668 mRNA_7300 0.51 -2.1
1,340,996 - 15668 mRNA_7300 0.52 +2.4
1,341,059 + 15668 mRNA_7300 0.52 +2.1
1,341,063 - 15668 mRNA_7300 0.52 +0.9
1,341,096 - 15668 mRNA_7300 0.53 +1.2
1,341,196 - 15668 mRNA_7300 0.54 -0.2
1,341,214 + 15668 mRNA_7300 0.54 +2.2
1,341,226 - 15668 mRNA_7300 0.54 -0.2
1,341,227 + 15668 mRNA_7300 0.54 -0.7
1,341,232 + 15668 mRNA_7300 0.54 +0.2
1,341,292 + 15668 mRNA_7300 0.55 -0.8
1,341,399 - 15668 mRNA_7300 0.56 -0.6
1,341,646 + 15668 mRNA_7300 0.58 +1.2
1,341,663 + 15668 mRNA_7300 0.58 -1.0
1,341,731 + 15668 mRNA_7300 0.59 -0.2
1,341,734 - 15668 mRNA_7300 0.59 +0.7
1,341,825 - 15668 mRNA_7300 0.60 +0.5
1,342,105 - 15668 mRNA_7300 0.63 +0.8
1,342,127 - 15668 mRNA_7300 0.63 -1.9
1,342,175 - 15668 mRNA_7300 0.64 +0.9
1,342,175 - 15668 mRNA_7300 0.64 -0.0
1,342,421 - 15668 mRNA_7300 0.66 -1.2
1,342,581 - 15668 mRNA_7300 0.68 +2.5
1,342,581 - 15668 mRNA_7300 0.68 -0.0
1,342,582 + 15668 mRNA_7300 0.68 -0.4
1,342,585 + 15668 mRNA_7300 0.68 +0.3
1,342,585 - 15668 mRNA_7300 0.68 +1.5
1,342,585 - 15668 mRNA_7300 0.68 -2.3
1,342,585 - 15668 mRNA_7300 0.68 -0.1
1,342,585 - 15668 mRNA_7300 0.68 +0.1
1,342,586 - 15668 mRNA_7300 0.68 +0.0
1,342,592 + 15668 mRNA_7300 0.68 +2.3
1,342,592 + 15668 mRNA_7300 0.68 +1.8
1,342,592 + 15668 mRNA_7300 0.68 +0.2
1,342,592 + 15668 mRNA_7300 0.68 +0.6
1,342,592 + 15668 mRNA_7300 0.68 -2.2
1,342,592 + 15668 mRNA_7300 0.68 +1.8
1,342,592 + 15668 mRNA_7300 0.68 -0.6
1,342,592 + 15668 mRNA_7300 0.68 -0.3
1,342,593 + 15668 mRNA_7300 0.68 +0.0
1,342,595 - 15668 mRNA_7300 0.68 -0.7
1,342,595 - 15668 mRNA_7300 0.68 -0.2
1,342,705 + 15668 mRNA_7300 0.69 +0.4
1,342,708 - 15668 mRNA_7300 0.69 -2.5
1,342,708 - 15668 mRNA_7300 0.69 +1.0
1,342,715 - 15668 mRNA_7300 0.69 +0.3
1,342,788 + 15668 mRNA_7300 0.70 +1.2
1,342,845 - 15668 mRNA_7300 0.70 -2.2
1,342,957 - 15668 mRNA_7300 0.71 +0.6
1,343,038 + 15668 mRNA_7300 0.72 -0.1
1,343,108 - 15668 mRNA_7300 0.73 +2.2
1,343,206 - 15668 mRNA_7300 0.74 -1.3
1,343,295 + 15668 mRNA_7300 0.75 +1.4
1,343,334 + 15668 mRNA_7300 0.75 +0.8
1,343,335 - 15668 mRNA_7300 0.75 -4.1
1,343,397 - 15668 mRNA_7300 0.76 -1.3
1,343,398 + 15668 mRNA_7300 0.76 +0.3
1,343,430 - 15668 mRNA_7300 0.76 -0.5
1,343,481 - 15668 mRNA_7300 0.77 +0.8
1,343,539 + 15668 mRNA_7300 0.77 -2.1
1,343,542 + 15668 mRNA_7300 0.77 +1.6
1,343,542 + 15668 mRNA_7300 0.77 -2.4
1,343,542 - 15668 mRNA_7300 0.77 -0.3
1,343,544 - 15668 mRNA_7300 0.77 -0.7
1,343,545 - 15668 mRNA_7300 0.77 +0.4
1,343,545 - 15668 mRNA_7300 0.77 +0.5
1,343,545 - 15668 mRNA_7300 0.77 -0.5
1,343,545 - 15668 mRNA_7300 0.77 +0.5
1,343,548 + 15668 mRNA_7300 0.77 +1.6
1,343,792 - 15668 mRNA_7300 0.80 -0.3
1,343,867 - 15668 mRNA_7300 0.81 +0.1
1,343,894 + 15668 mRNA_7300 0.81 +0.4
1,343,930 - 15668 mRNA_7300 0.81 -1.1
1,344,030 - 15668 mRNA_7300 0.82 +2.5
1,344,174 + 15668 mRNA_7300 0.84 +0.8
1,344,296 + 15668 mRNA_7300 0.85 +0.4
1,344,318 + 15668 mRNA_7300 0.85 -1.0
1,344,321 + 15668 mRNA_7300 0.85 +1.0
1,344,393 - 15668 mRNA_7300 0.86 -0.0
1,344,438 - 15668 mRNA_7300 0.86 +1.1
1,344,463 - 15668 mRNA_7300 0.87 -0.5
1,344,470 + 15668 mRNA_7300 0.87 -0.1
1,344,597 + 15668 mRNA_7300 0.88 +0.0
1,344,755 - 15668 mRNA_7300 0.89 +1.7
1,344,865 + +1.1
1,344,966 - -0.1
1,345,023 + +1.2
1,345,172 - +0.1
1,345,364 - +0.4
1,345,605 - +2.7
1,346,064 + -1.1
1,346,359 - -1.3
1,346,364 + +1.5
1,346,542 - 15669 mRNA_7301 0.18 +1.5
1,346,547 - 15669 mRNA_7301 0.18 -1.2
1,346,548 + 15669 mRNA_7301 0.18 +0.9
1,346,548 + 15669 mRNA_7301 0.18 -0.1
1,346,548 - 15669 mRNA_7301 0.18 -0.9

Or see this region's nucleotide sequence