Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7308

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15675 and 15676 overlap by 37 nucleotides15676 and 15677 are separated by 655 nucleotides mRNA_7307: 15675 - Hypothetical Protein, at 1,359,048 to 1,360,624 15675 mRNA_7308: 15676 - Hypothetical Protein, at 1,360,588 to 1,362,752 15676 mRNA_7309: 15677 - KOG0803 Predicted E3 ubiquitin ligase, at 1,363,408 to 1,369,017 15677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,359,853 - 15675 mRNA_7307 0.51 -1.0
1,359,995 - 15675 mRNA_7307 0.60 +2.0
1,360,101 + 15675 mRNA_7307 0.67 +0.1
1,360,153 + 15675 mRNA_7307 0.70 -0.3
1,360,280 + 15675 mRNA_7307 0.78 +0.3
1,360,424 + 15675 mRNA_7307 0.87 -2.1
1,360,425 + 15675 mRNA_7307 0.87 +0.6
1,360,548 - -0.7
1,360,613 + +1.0
1,360,650 + +0.4
1,360,694 - +1.8
1,360,967 - 15676 mRNA_7308 0.18 -0.3
1,361,109 + 15676 mRNA_7308 0.24 +1.2
1,361,190 - 15676 mRNA_7308 0.28 +0.5
1,361,433 + 15676 mRNA_7308 0.39 -0.7
1,361,896 - 15676 mRNA_7308 0.60 -0.0
1,362,992 - -0.1
1,363,018 + -0.2
1,363,187 - +1.0
1,363,317 + -0.6
1,363,361 + -0.3
1,363,381 - +0.9
1,363,432 - -0.1
1,363,488 + +0.9
1,363,499 - +1.2
1,363,519 + +0.4

Or see this region's nucleotide sequence