Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7355

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15722 and 15723 are separated by 305 nucleotides15723 and 15724 are separated by 551 nucleotides mRNA_7354: 15722 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 77,148 to 79,118 15722 mRNA_7355: 15723 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 79,424 to 80,346 15723 mRNA_7356: 15724 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 80,898 to 81,821 15724

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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78,743 + 15722 mRNA_7354 0.81 -0.3
78,864 - 15722 mRNA_7354 0.87 -0.2
78,885 - 15722 mRNA_7354 0.88 +0.0
79,196 + -0.1
79,204 - +0.8
79,210 - -2.0
79,346 + -1.1
79,350 + -0.5
79,377 - +0.5
79,381 + -2.1
79,396 + +1.6
79,530 - 15723 mRNA_7355 0.11 -0.5
79,545 - 15723 mRNA_7355 0.13 +0.6
80,002 - 15723 mRNA_7355 0.63 +1.5
80,292 - -0.3
80,293 + -0.9
80,394 - +0.1
80,501 - +0.9
80,501 - +0.5
80,501 - -0.7
80,501 - +1.3
80,512 + +0.8
80,563 + +0.1
80,693 - +0.7
80,702 - -0.2
80,724 - +1.0
81,121 - 15724 mRNA_7356 0.24 +0.1
81,268 - 15724 mRNA_7356 0.40 -2.0
81,277 - 15724 mRNA_7356 0.41 -0.6

Or see this region's nucleotide sequence