Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7379

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15747 and 15748 are separated by 228 nucleotides mRNA_7379: 15747 - SUPERFAMILY--SSF49344, at 134,802 to 136,760 15747 mRNA_7380: 15748 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 136,989 to 140,179 15748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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134,124 + -1.3
134,449 + +0.7
134,744 + +0.1
134,754 - +0.1
135,030 + 15747 mRNA_7379 0.12 -0.8
135,180 - 15747 mRNA_7379 0.19 -0.2
135,196 + 15747 mRNA_7379 0.20 +0.4
135,313 + 15747 mRNA_7379 0.26 -1.2
135,496 - 15747 mRNA_7379 0.35 +1.4
135,496 + 15747 mRNA_7379 0.35 -0.7
135,499 - 15747 mRNA_7379 0.36 +2.0
135,500 - 15747 mRNA_7379 0.36 +2.9
135,753 + 15747 mRNA_7379 0.49 -0.2
135,764 + 15747 mRNA_7379 0.49 -0.1
135,917 + 15747 mRNA_7379 0.57 -1.0
135,918 - 15747 mRNA_7379 0.57 -0.2
136,050 + 15747 mRNA_7379 0.64 -0.2
136,065 - 15747 mRNA_7379 0.64 -1.1
136,186 + 15747 mRNA_7379 0.71 +0.4
136,539 + 15747 mRNA_7379 0.89 +1.8
136,639 - -1.1
136,639 - -0.7
136,682 + -0.3
136,683 + -0.4
136,704 + -0.1
136,706 + -0.1
136,707 - +1.0
136,708 - +0.2
136,708 - +1.1
136,712 + +0.7
136,718 + -0.0
136,725 + +0.3
136,727 + -0.2
136,760 + +0.0
136,760 + -0.3
137,320 - 15748 mRNA_7380 0.10 +1.0
137,352 + 15748 mRNA_7380 0.11 -0.7

Or see this region's nucleotide sequence