Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7381

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15749 and 15750 are separated by 47 nucleotides mRNA_7381: 15749 - K03128 TAF2 transcription initiation factor TFIID subunit 2, at 141,230 to 147,514 15749 mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955 15750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,244 - +0.8
140,266 + +1.5
140,266 + +0.3
140,281 + +0.2
140,400 - -0.8
140,549 + +3.7
140,687 - +0.8
140,811 + +1.2
140,959 - -0.7
140,992 + +1.2
140,995 + -1.9
141,001 + -0.2
141,002 - -1.1
147,116 + -3.3
147,306 + +0.5
147,309 - -1.3
147,315 + -0.4
147,895 - 15750 mRNA_7382 0.24 -0.6
148,023 + 15750 mRNA_7382 0.33 +0.9
148,063 + 15750 mRNA_7382 0.36 -2.1
148,169 + 15750 mRNA_7382 0.44 -1.7
148,326 + 15750 mRNA_7382 0.55 -0.3
148,341 + 15750 mRNA_7382 0.56 -0.1
148,396 + 15750 mRNA_7382 0.60 -0.8
148,441 + 15750 mRNA_7382 0.63 +0.2
148,483 - 15750 mRNA_7382 0.66 +1.4

Or see this region's nucleotide sequence