Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7442

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15809 and 15810 are separated by 425 nucleotides15810 and 15811 are separated by 740 nucleotides mRNA_7441: 15809 - K08884 K08884 serine/threonine protein kinase, bacterial, at 287,013 to 288,261 15809 mRNA_7442: 15810 - K02886 RP-L2, MRPL2, rplB large subunit ribosomal protein L2, at 288,687 to 290,089 15810 mRNA_7443: 15811 - Hypothetical Protein, at 290,830 to 292,138 15811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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287,985 + 15809 mRNA_7441 0.78 +0.2
288,151 - -3.3
288,155 - -0.3
288,307 - -2.2
288,457 + -0.6
288,470 + +1.7
288,471 + -0.1
288,477 - +0.4
288,627 - +2.8
290,483 - -0.4
290,490 + +0.9
290,493 - -1.2
290,495 + +1.1
290,497 + +0.2
290,506 + +0.1
290,508 - +1.2
290,509 - -0.2
290,517 - -0.0
290,527 + -0.4
290,528 - -1.1
290,653 + +0.2
290,785 - +1.2
290,936 + -0.8
290,943 + -0.2

Or see this region's nucleotide sequence