Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7470

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15837 and 15838 are separated by 78 nucleotides15838 and 15839 are separated by 472 nucleotides mRNA_7469: 15837 - K20403 TTI1 TELO2-interacting protein 1, at 352,502 to 356,237 15837 mRNA_7470: 15838 - K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16, at 356,316 to 361,042 15838 mRNA_7471: 15839 - K00838 ARO8 aromatic amino acid aminotransferase I, at 361,515 to 364,061 15839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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356,519 + -1.4
361,063 + -1.9
361,236 + +0.1
361,326 - +0.8
361,347 - +0.6
361,516 - -0.4
361,528 - -1.6
361,810 + 15839 mRNA_7471 0.12 -1.9
361,948 + 15839 mRNA_7471 0.17 -1.6

Or see this region's nucleotide sequence