Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7471

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15838 and 15839 are separated by 472 nucleotides mRNA_7470: 15838 - K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16, at 356,316 to 361,042 15838 mRNA_7471: 15839 - K00838 ARO8 aromatic amino acid aminotransferase I, at 361,515 to 364,061 15839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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361,063 + -1.9
361,236 + +0.1
361,326 - +0.8
361,347 - +0.6
361,516 - -0.4
361,528 - -1.6
361,810 + 15839 mRNA_7471 0.12 -1.9
361,948 + 15839 mRNA_7471 0.17 -1.6
362,338 + 15839 mRNA_7471 0.32 +0.5
362,928 + 15839 mRNA_7471 0.55 -0.5
363,079 - 15839 mRNA_7471 0.61 -0.5
363,082 + 15839 mRNA_7471 0.62 +0.2
363,083 + 15839 mRNA_7471 0.62 +0.2
363,098 + 15839 mRNA_7471 0.62 +0.5
363,221 - 15839 mRNA_7471 0.67 -0.2
363,345 + 15839 mRNA_7471 0.72 -1.9
363,642 - 15839 mRNA_7471 0.84 +2.4
363,663 - 15839 mRNA_7471 0.84 +0.7
363,920 - -0.1
363,936 - -3.3
363,950 - -0.1
363,962 - +0.8
363,963 + +1.0
364,564 + -1.4
364,641 - +0.5
364,641 - -1.4
364,695 - +0.7
364,725 - -1.0
364,829 - +0.4

Or see this region's nucleotide sequence