Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7487

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15854 and 15855 are separated by 738 nucleotides mRNA_7486: 15854 - K08287 E2.7.12.1 dual-specificity kinase, at 397,692 to 399,920 15854 mRNA_7487: 15855 - K17619 MDP1 magnesium-dependent phosphatase 1, at 400,659 to 401,356 15855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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399,743 + -0.9
399,895 + +0.0
399,911 - -1.2
399,912 + +2.0
400,050 - -1.0
400,064 + -0.6
400,070 - +2.7
400,190 - +0.8
400,209 - -1.0
400,211 - +0.6
400,218 + -0.5
400,219 + +1.0
400,225 - -0.2
400,229 - +0.5
400,230 + -1.3
400,230 + +0.9
400,238 + -0.1
400,508 - -0.1
400,667 + +0.4
401,283 + 15855 mRNA_7487 0.89 +0.1
401,372 + -1.6
401,519 + +1.0
401,532 - +3.1
401,537 - -0.0
401,538 - -0.8
401,546 - -1.3
401,677 + -2.4
401,684 - +2.6
401,690 - +1.9
402,141 - +0.5
402,149 + +0.5
402,154 + +0.2
402,160 - -0.1

Or see this region's nucleotide sequence