Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7491

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15858 and 15859 are separated by 86 nucleotides mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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410,858 + 15858 mRNA_7490 0.56 -1.2
411,007 - 15858 mRNA_7490 0.64 -0.1
411,143 + 15858 mRNA_7490 0.71 -2.1
411,566 - -0.8
411,739 + -1.1
411,748 - -0.7
411,765 - -0.0
411,871 - -0.8
411,895 + +0.3
412,000 - 15859 mRNA_7491 0.18 -0.0
412,034 + 15859 mRNA_7491 0.21 +0.1
412,036 - 15859 mRNA_7491 0.21 +1.2
412,037 + 15859 mRNA_7491 0.21 +0.4
412,195 + 15859 mRNA_7491 0.37 -0.8
412,195 + 15859 mRNA_7491 0.37 +0.2
412,195 + 15859 mRNA_7491 0.37 +1.3
412,200 - 15859 mRNA_7491 0.38 -1.0
412,461 + 15859 mRNA_7491 0.63 +0.9
412,481 - 15859 mRNA_7491 0.65 -0.8
412,763 - +0.2
412,766 - -1.8
412,789 + +1.2
412,867 - -2.9
412,916 - +0.1
412,937 + -0.5
413,041 - -2.0
413,207 + +1.4
413,319 - -1.7
413,353 - -0.3
413,370 + -0.4
413,651 - -0.7
413,785 - -1.1

Or see this region's nucleotide sequence