Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7548

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15915 and 15916 are separated by 266 nucleotides mRNA_7547: 15915 - Hypothetical Protein, at 534,942 to 536,762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537,029 to 539,584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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536,312 + 15915 mRNA_7547 0.75 +0.0
536,336 - 15915 mRNA_7547 0.77 +1.3
536,342 + 15915 mRNA_7547 0.77 +0.5
536,434 - 15915 mRNA_7547 0.82 -1.4
536,712 - -0.4
536,784 - -0.7
536,793 + +0.2
536,885 - +0.9
536,930 + +0.2
537,063 + -0.9
537,338 - 15916 mRNA_7548 0.12 -0.1
537,378 + 15916 mRNA_7548 0.14 -0.8
537,470 + 15916 mRNA_7548 0.17 +1.4
537,957 + 15916 mRNA_7548 0.36 -0.9
538,048 - 15916 mRNA_7548 0.40 +0.0
538,178 - 15916 mRNA_7548 0.45 +0.3
538,196 + 15916 mRNA_7548 0.46 +2.0
538,345 - 15916 mRNA_7548 0.51 +0.2
538,638 - 15916 mRNA_7548 0.63 -1.3
538,883 - 15916 mRNA_7548 0.73 +1.2
539,056 + 15916 mRNA_7548 0.79 -0.4
539,103 - 15916 mRNA_7548 0.81 -1.0
539,109 - 15916 mRNA_7548 0.81 -0.2
539,216 + 15916 mRNA_7548 0.86 +0.9
539,243 + 15916 mRNA_7548 0.87 +1.1
539,350 + -0.8
539,387 + -3.0
539,545 - +0.3
539,557 + -1.4
539,642 - -2.5
539,644 - +0.5
539,654 - +0.5
539,659 - +0.3
539,661 - -0.1
539,677 + +0.6
539,696 - +0.4
539,762 - +1.0
539,772 - -0.2
539,774 - -1.7
539,782 - -0.4
539,788 + -0.2
539,796 - -0.6
539,802 - +0.2
539,802 - -0.2
539,803 - +0.5
539,803 - +1.2
539,806 + -0.6
539,815 + -0.5
539,821 - -0.1
539,821 + -1.1
539,823 + +1.1
539,826 - +0.1
539,828 - +0.9
539,833 + -0.5
539,839 + -1.7
539,839 - +0.0
539,848 - -0.5
539,849 - -0.1
539,849 - -0.0
539,850 - -0.4
539,850 + -0.7
539,851 - -1.4
539,852 - -0.1
539,865 + +1.3
539,872 + -2.6
539,874 - -0.0
539,876 + -0.4
539,877 - -0.3
539,898 + -1.0
539,963 - +1.6
539,966 - +0.4
539,971 - +0.8
539,981 + -0.7
539,994 + -0.5
539,998 - +0.1
539,999 - +0.4
540,000 - -1.6
540,003 - -2.6
540,004 + +1.0
540,004 + -0.9
540,005 - +0.7
540,006 - +2.3
540,006 + -0.8
540,006 + -0.0
540,006 + -0.6
540,008 + +0.4
540,012 + +0.9
540,015 - +0.5
540,016 + -0.6
540,016 + -0.4
540,016 + -0.1
540,022 + +0.0
540,023 + +0.2
540,027 + -0.2
540,027 + +0.2
540,028 - -2.5
540,029 + +0.9
540,038 + -2.2
540,060 - +0.1
540,061 - -1.7
540,061 - +0.1
540,063 + +0.1
540,068 - +0.2
540,072 - +0.5
540,076 + -0.1
540,081 - +0.1
540,084 + -1.9
540,085 - -2.0
540,092 - +1.0
540,094 - +1.8
540,098 - -0.1
540,102 + -1.5
540,109 + +0.5
540,118 + -0.3
540,150 - -0.5
540,152 + -0.2
540,154 - -2.2
540,156 - +0.4
540,157 - +0.5
540,158 - +1.1
540,160 + +1.0
540,160 + -0.3
540,160 + +0.9
540,161 - +0.9
540,163 + +1.4
540,168 - -1.3
540,169 - -0.3
540,173 - +2.7
540,173 - +0.9
540,173 - +0.8
540,174 - -1.3
540,178 + -1.0
540,178 + -1.9
540,179 - +2.9
540,180 + -0.0
540,194 + +2.2
540,194 + -1.1
540,200 - +0.5
540,210 + +0.5
540,217 + +1.1
540,234 + -1.3
540,236 + +2.5
540,239 - -0.3
540,246 - -0.6
540,248 + +0.6
540,251 - +0.7
540,252 + -0.7
540,256 - +0.8
540,264 + +0.8
540,266 - +0.3
540,269 - +0.6
540,270 + +2.1
540,274 - -1.5
540,283 - -0.4
540,286 + +0.1
540,288 + -1.5
540,289 + +0.9
540,295 - +0.0
540,297 - +1.5
540,390 + +0.0
540,406 - +1.4
540,411 - -1.1
540,432 + +0.3
540,441 + -1.3
540,446 - -0.6
540,448 - +0.1
540,451 + -0.0
540,565 - -0.3
540,576 - -0.3

Or see this region's nucleotide sequence