Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7612

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15979 and 15980 are separated by 550 nucleotides15980 and 15981 are separated by 255 nucleotides mRNA_7611: 15979 - KOG4779 Predicted membrane protein, at 671,733 to 672,150 15979 mRNA_7612: 15980 - Hypothetical Protein, at 672,701 to 674,569 15980 mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674,825 to 677,007 15981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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672,336 + +0.1
672,338 + -0.6
672,342 + +0.5
672,476 + -0.8
672,480 + -0.7
672,483 + +1.7
672,484 - -0.4
672,493 - +0.1
672,593 - -0.7
672,596 - +1.2
672,614 - -0.3
672,620 - -0.1
672,620 + +0.5
672,628 - +1.2
672,760 - +0.2
672,894 - 15980 mRNA_7612 0.10 +0.9
673,031 + 15980 mRNA_7612 0.18 +0.3
673,077 + 15980 mRNA_7612 0.20 -0.6
673,217 + 15980 mRNA_7612 0.28 -0.2
673,258 + 15980 mRNA_7612 0.30 -0.5
673,790 + 15980 mRNA_7612 0.58 -0.8
674,664 - -0.0
674,973 - -0.4
675,008 + +1.2
675,131 - 15981 mRNA_7613 0.14 -0.4
675,166 + 15981 mRNA_7613 0.16 +0.6
675,182 - 15981 mRNA_7613 0.16 -0.1

Or see this region's nucleotide sequence