Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7646

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16013 and 16014 are separated by 38 nucleotides16014 and 16015 are separated by 66 nucleotides mRNA_7645: 16013 - K04794 PTH2 peptidyl-tRNA hydrolase, PTH2 family, at 756,752 to 757,515 16013 mRNA_7646: 16014 - Hypothetical Protein, at 757,554 to 759,024 16014 mRNA_7647: 16015 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 759,091 to 760,573 16015

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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756,632 + +0.8
757,519 - +1.1
757,671 + +0.2
757,822 + 16014 mRNA_7646 0.18 -1.7
757,964 - 16014 mRNA_7646 0.28 -1.2
758,380 + 16014 mRNA_7646 0.56 +0.1
758,414 + 16014 mRNA_7646 0.58 -2.5
758,432 + 16014 mRNA_7646 0.60 -0.0
758,541 - 16014 mRNA_7646 0.67 -0.8
758,593 + 16014 mRNA_7646 0.71 -0.9
758,598 + 16014 mRNA_7646 0.71 -0.2
758,708 + 16014 mRNA_7646 0.78 -0.3
758,848 + 16014 mRNA_7646 0.88 +0.3
758,972 - -0.2
759,154 - +2.0
759,310 + 16015 mRNA_7647 0.15 -1.8
759,447 + 16015 mRNA_7647 0.24 +0.3
759,730 - 16015 mRNA_7647 0.43 -1.0
759,920 - 16015 mRNA_7647 0.56 -0.8

Or see this region's nucleotide sequence