Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7662

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16029 and 16030 are separated by 197 nucleotides16030 and 16031 are separated by 455 nucleotides mRNA_7661: 16029 - KOG3337 Protein similar to predicted member of the intramitochondrial sorting protein family, at 787,329 to 788,508 16029 mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788,706 to 790,925 16030 mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587 16031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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788,930 - 16030 mRNA_7662 0.10 +0.1
789,111 - 16030 mRNA_7662 0.18 +0.3
790,402 - 16030 mRNA_7662 0.76 -1.4
790,975 - +1.9
790,988 - +0.2
790,990 + +1.0
790,993 - -0.1
790,995 - +0.5
791,015 - -0.8
791,036 + -2.1
791,092 - +1.3
791,131 - +0.5
791,133 + +2.5
791,151 + +0.7
791,156 + +0.6
791,193 - -1.6
791,199 - -0.6
791,212 + -0.9
791,286 + -1.2
791,290 - -0.7
791,295 + -0.0
791,295 + -0.2
791,312 + +0.9
791,315 - -0.1
791,335 - -2.0
791,339 - -0.7
791,431 + -0.0
791,444 + -0.0
791,446 + -0.1
791,447 - +0.1
791,475 + -2.5
791,760 + 16031 mRNA_7663 0.17 +0.4
791,851 + 16031 mRNA_7663 0.21 -1.5

Or see this region's nucleotide sequence