Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7688

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16055 and 16056 are separated by 103 nucleotides16056 and 16057 are separated by 209 nucleotides mRNA_7687: 16055 - SUPERFAMILY--SSF48371, at 838,504 to 840,672 16055 mRNA_7688: 16056 - Hypothetical Protein, at 840,776 to 844,586 16056 mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844,796 to 845,727 16057

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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839,776 - 16055 mRNA_7687 0.59 +1.3
839,893 - 16055 mRNA_7687 0.64 +1.0
839,893 - 16055 mRNA_7687 0.64 +0.3
839,901 + 16055 mRNA_7687 0.64 +0.5
839,966 - 16055 mRNA_7687 0.67 -1.1
839,988 + 16055 mRNA_7687 0.68 +0.8
840,006 - 16055 mRNA_7687 0.69 +1.5
840,297 - 16055 mRNA_7687 0.83 -2.3
840,337 + 16055 mRNA_7687 0.85 -1.1
840,619 - -3.4
840,623 - -0.0
840,623 - +0.2
840,624 + +0.5
840,626 - +0.8
840,627 + +1.6
840,774 + -0.2
840,781 + +1.8
840,883 - -1.7
840,920 + -0.5
841,048 - -0.4
841,217 - 16056 mRNA_7688 0.12 -1.5
841,329 - 16056 mRNA_7688 0.15 +0.0
841,364 - 16056 mRNA_7688 0.15 +2.0
841,503 - 16056 mRNA_7688 0.19 -0.8
841,542 - 16056 mRNA_7688 0.20 -1.3
841,604 + 16056 mRNA_7688 0.22 +1.1
841,651 + 16056 mRNA_7688 0.23 +0.1
841,661 - 16056 mRNA_7688 0.23 -0.4
841,678 + 16056 mRNA_7688 0.24 -0.4
841,708 - 16056 mRNA_7688 0.24 +0.3
841,776 - 16056 mRNA_7688 0.26 +1.1
841,776 - 16056 mRNA_7688 0.26 -1.1
841,841 + 16056 mRNA_7688 0.28 +0.9
841,925 - 16056 mRNA_7688 0.30 -0.1
841,940 + 16056 mRNA_7688 0.31 -0.7
842,047 - 16056 mRNA_7688 0.33 -1.1
842,047 - 16056 mRNA_7688 0.33 +2.9
842,213 - 16056 mRNA_7688 0.38 -0.4
842,221 - 16056 mRNA_7688 0.38 +1.3
842,356 - 16056 mRNA_7688 0.41 -0.6
842,514 - 16056 mRNA_7688 0.46 -2.0
842,539 - 16056 mRNA_7688 0.46 +2.6
842,660 - 16056 mRNA_7688 0.49 -1.4
842,678 - 16056 mRNA_7688 0.50 +0.6
842,834 - 16056 mRNA_7688 0.54 +0.6
842,855 + 16056 mRNA_7688 0.55 +0.0
842,917 - 16056 mRNA_7688 0.56 +0.3
842,987 + 16056 mRNA_7688 0.58 -1.4
843,062 + 16056 mRNA_7688 0.60 +2.1
843,097 - 16056 mRNA_7688 0.61 +0.5
843,139 + 16056 mRNA_7688 0.62 +0.1
843,139 + 16056 mRNA_7688 0.62 -0.3
843,139 + 16056 mRNA_7688 0.62 +0.5
843,238 + 16056 mRNA_7688 0.65 -0.6
843,257 + 16056 mRNA_7688 0.65 +0.1
843,676 - 16056 mRNA_7688 0.76 -0.3
843,717 + 16056 mRNA_7688 0.77 -1.3
843,731 - 16056 mRNA_7688 0.78 +0.4
843,773 - 16056 mRNA_7688 0.79 +0.8
843,795 - 16056 mRNA_7688 0.79 -1.2
843,801 - 16056 mRNA_7688 0.79 -1.5
843,878 + 16056 mRNA_7688 0.81 +0.4
843,993 + 16056 mRNA_7688 0.84 -0.2
844,075 - 16056 mRNA_7688 0.87 -1.0
844,197 - 16056 mRNA_7688 0.90 +2.3
844,237 - +1.3
844,516 + -0.0
844,521 - -1.3
844,585 + +0.4
844,592 - -1.1
844,713 - +0.6
845,021 + 16057 mRNA_7689 0.24 -0.6
845,154 + 16057 mRNA_7689 0.38 -1.1
845,157 - 16057 mRNA_7689 0.39 +1.8
845,281 + 16057 mRNA_7689 0.52 +1.2
845,370 - 16057 mRNA_7689 0.62 +2.3
845,373 - 16057 mRNA_7689 0.62 -0.5
845,510 - 16057 mRNA_7689 0.77 +0.8
845,586 + 16057 mRNA_7689 0.85 -2.0

Or see this region's nucleotide sequence