Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7699

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16066 and 16067 are separated by 190 nucleotides mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332 16066 mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227 16067

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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864,794 - 16066 mRNA_7698 0.49 -0.2
864,982 + 16066 mRNA_7698 0.67 +2.1
865,147 - 16066 mRNA_7698 0.82 -0.4
865,147 - 16066 mRNA_7698 0.82 -0.4
865,306 + -1.6
871,306 + -1.4
871,313 - +0.9
871,316 + +0.9
871,317 + -0.1
871,324 + +0.2
871,325 + -0.7
871,335 + +0.7
871,339 - +0.6
871,339 + +0.4
871,339 + +0.5
871,438 - -0.0
871,443 + -0.8
871,451 - +0.2
871,471 - -1.7
871,472 - +0.1
871,475 + +1.0
871,475 + -2.1
871,479 + +0.7
871,548 - -1.8
871,947 + +0.1
871,975 + -0.4
871,978 + -1.5
872,059 - -0.6
872,089 - -1.3
872,099 + +0.3
872,102 - -0.3

Or see this region's nucleotide sequence