Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7710

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16077 and 16078 are separated by 174 nucleotides16078 and 16079 are separated by 88 nucleotides mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902,207 to 904,253 16077 mRNA_7710: 16078 - K06067 HDAC1_2 histone deacetylase 1/2, at 904,428 to 906,811 16078 mRNA_7711: 16079 - Hypothetical Protein, at 906,900 to 908,235 16079

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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903,446 - 16077 mRNA_7709 0.61 +1.1
903,978 + 16077 mRNA_7709 0.87 -1.6
903,998 + 16077 mRNA_7709 0.87 -0.2
904,137 + +2.2
904,248 - +0.9
904,263 - -0.4
906,811 - -0.6
906,849 - +0.4
906,964 + +0.0
907,009 - +1.2
907,134 + 16079 mRNA_7711 0.18 -0.2
907,406 - 16079 mRNA_7711 0.38 +1.2
907,691 + 16079 mRNA_7711 0.59 -0.1

Or see this region's nucleotide sequence