Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7712

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16079 and 16080 are separated by 99 nucleotides16080 and 16081 are separated by 112 nucleotides mRNA_7711: 16079 - Hypothetical Protein, at 906,900 to 908,235 16079 mRNA_7712: 16080 - K12586 RRP43, EXOSC8, OIP2 exosome complex component RRP43, at 908,335 to 909,649 16080 mRNA_7713: 16081 - Hypothetical Protein, at 909,762 to 910,518 16081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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907,406 - 16079 mRNA_7711 0.38 +1.2
907,691 + 16079 mRNA_7711 0.59 -0.1
907,962 - 16079 mRNA_7711 0.79 -0.1
907,967 + 16079 mRNA_7711 0.80 -0.1
907,972 + 16079 mRNA_7711 0.80 +0.4
907,978 + 16079 mRNA_7711 0.81 -1.1
908,099 - 16079 mRNA_7711 0.90 +0.6
909,698 - -0.3
909,715 - +2.1
909,716 + +0.9

Or see this region's nucleotide sequence