Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7781

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16148 and 16149 are separated by 36 nucleotides16149 and 16150 are separated by 311 nucleotides mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1,045,975 to 1,050,892 16148 mRNA_7781: 16149 - K18664 SLH1 antiviral helicase SLH1, at 1,050,929 to 1,056,955 16149 mRNA_7782: 16150 - Hypothetical Protein, at 1,057,267 to 1,057,848 16150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,050,055 - 16148 mRNA_7780 0.83 -0.2
1,050,111 - 16148 mRNA_7780 0.84 +0.1
1,050,220 + 16148 mRNA_7780 0.86 +0.2
1,050,549 + +0.4
1,050,689 + -2.2
1,050,908 - -0.8
1,050,943 - +0.3
1,051,013 - +0.6
1,051,022 + -1.3
1,051,085 + -0.7
1,051,197 - +1.6
1,051,302 + -0.2
1,051,304 - +1.8
1,051,304 - +1.4
1,051,315 + +0.7
1,051,504 - -2.1
1,051,537 + 16149 mRNA_7781 0.10 +0.7
1,051,656 + 16149 mRNA_7781 0.12 -0.8
1,051,769 + 16149 mRNA_7781 0.14 -0.8
1,051,770 - 16149 mRNA_7781 0.14 +0.9
1,051,783 + 16149 mRNA_7781 0.14 -0.7
1,051,786 - 16149 mRNA_7781 0.14 +2.9
1,052,060 - 16149 mRNA_7781 0.19 +0.0
1,052,267 - 16149 mRNA_7781 0.22 -0.3
1,052,366 + 16149 mRNA_7781 0.24 -1.7
1,052,412 + 16149 mRNA_7781 0.25 -0.4
1,052,619 - 16149 mRNA_7781 0.28 -0.7
1,052,828 - 16149 mRNA_7781 0.32 -1.9
1,053,100 - 16149 mRNA_7781 0.36 -1.2
1,053,284 + 16149 mRNA_7781 0.39 -0.8
1,053,402 - 16149 mRNA_7781 0.41 +1.4
1,053,818 - 16149 mRNA_7781 0.48 -0.6
1,053,982 - 16149 mRNA_7781 0.51 -0.5
1,053,992 + 16149 mRNA_7781 0.51 -1.6
1,054,403 - 16149 mRNA_7781 0.58 -0.3
1,054,493 - 16149 mRNA_7781 0.59 -0.3
1,054,737 - 16149 mRNA_7781 0.63 -2.5
1,054,889 - 16149 mRNA_7781 0.66 -0.8
1,054,891 + 16149 mRNA_7781 0.66 -0.3
1,054,963 - 16149 mRNA_7781 0.67 +1.0
1,055,110 + 16149 mRNA_7781 0.69 +0.1
1,055,187 + 16149 mRNA_7781 0.71 +0.0
1,055,934 - 16149 mRNA_7781 0.83 -0.1
1,056,121 + 16149 mRNA_7781 0.86 -2.9
1,056,126 + 16149 mRNA_7781 0.86 +2.0
1,056,449 - -1.1
1,056,486 + -0.6
1,056,591 - -0.4
1,056,740 + -0.7
1,056,757 - +0.4
1,056,778 + -0.5
1,056,899 + -0.6
1,056,925 - -0.8
1,057,042 - +1.2
1,057,066 - +1.3
1,057,067 + +0.2
1,057,083 - +1.3
1,057,084 + +0.1
1,057,104 + -0.3
1,057,179 - +1.7
1,057,211 + +0.4
1,057,212 + +0.3
1,057,214 - -0.0
1,057,324 + -1.0
1,057,780 - 16150 mRNA_7782 0.88 -1.0
1,057,783 - 16150 mRNA_7782 0.89 -0.1
1,057,942 + -0.7

Or see this region's nucleotide sequence