Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7864

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16232 and 16233 are separated by 209 nucleotides mRNA_7864: 16232 - PRINTS-Proline rich extensin signature-PR01217, at 1,258,251 to 1,258,922 16232 mRNA_7865: 16233 - Hypothetical Protein, at 1,259,132 to 1,259,731 16233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,257,307 - +0.5
1,257,427 - +2.0
1,258,758 - 16232 mRNA_7864 0.75 -0.8
1,258,895 - -1.4
1,258,924 + -1.6
1,259,173 + +1.3

Or see this region's nucleotide sequence