Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7865

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16232 and 16233 are separated by 209 nucleotides16233 and 16234 are separated by 483 nucleotides mRNA_7864: 16232 - PRINTS-Proline rich extensin signature-PR01217, at 1,258,251 to 1,258,922 16232 mRNA_7865: 16233 - Hypothetical Protein, at 1,259,132 to 1,259,731 16233 mRNA_7866: 16234 - Hypothetical Protein, at 1,260,215 to 1,261,528 16234

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,258,758 - 16232 mRNA_7864 0.75 -0.8
1,258,895 - -1.4
1,258,924 + -1.6
1,259,173 + +1.3
1,260,205 + -0.6
1,260,567 - 16234 mRNA_7866 0.27 -0.5

Or see this region's nucleotide sequence